scviva.pl.scviva_de.plot_niche_de_decision_boundary

scviva.pl.scviva_de.plot_niche_de_decision_boundary#

scviva.pl.scviva_de.plot_niche_de_decision_boundary(results, X=None, y=None, filter=None, background_filter=None, markersize=50, fontsize=10, chosen_colormap='seismic', path_to_save=None, show_plot=True, dpi=1000, margin=0.1, manual_limits=None, legend_loc='upper right')[source]#

Plot the results of the niche differential expression analysis.

Parameters:

  • results (DifferentialExpressionResults) – Fitted DifferentialExpressionResults.

  • X (DataFrame | None) – Design matrix: log fold changes for group 1 vs group 2 and neighbors 1 vs group 2. If None, the design matrix from the classifier is used.

  • y (Series | None) – Labels: FDR values for group 1 vs neighbors 1. If None, the labels from the classifier are used.

  • filter (Iterable | None) – Genes to include in the plot.

  • background_filter (Iterable | None) – Genes to include in the plot as background.

  • markersize (int) – Size of the markers.

  • fontsize (int) – Font size for the gene names.

  • chosen_colormap (str) – Colormap to use for the decision boundary.

  • path_to_save (str | None) – Path to save the plot.

  • show_plot (bool) – Whether to show the plot. Default: True.

  • dpi (int) – Resolution of the saved plot.

  • margin (float) – Margin to add to the plot limits.

  • manual_limits (tuple | None) – Manual limits for the plot.

  • legend_loc (str) – Location of the legend.

Return type:

None